TSS: Rfmm 156258.1: Difference between revisions

Revision as of 00:52, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_156258.1
Species:	mouse
Chr:	chr18

Start:	15893167
End:	15893179
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	DNase-H3K4me3 (EM10D2578947,EM10E1063593)
Category:	DNase-H3K4me3

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK036927:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000130553.2:-35 NM_001364992.1:-35 NM_199055.3:-35 AK017407:-35 view more...

Gene_name:	Chst9
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	41
Nearest PromoterID:	NM_199055.3
Entrez ID:	Chst9
Nearest Unigene:	NM_001364992
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Chst9
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK036927:0 ENSMUST00000130553.2:-35 NM_001364992.1:-35 NM_199055.3:-35 AK017407:-35
 |annotation=promoter-TSS (NM_001364992.1)
 |ccre_category=DNase-H3K4me3
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_199055.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000130553.2:-35 NM_001364992.1:-35 NM_199055.3:-35 AK017407:-35
 |nearest_unigene=NM_001364992
 |peak_score=1