TSS: Rfmm 15704.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_001312900.1:6 NM_008077.5:6 ENSMUST00000155979.8:40 AK054554:40 KM102984:41 AK148497:43 AK160868:44 AK136801:57 ENSMUST00000130604.8:-71 ENSMUST00000094934.11:-71 ENSMUST00000148210.8:73 BC027059:90 AF326548:91 AF326547:91 Z49976:173
|annotation=promoter-TSS (NM_001312900.1)
|annotation=promoter-TSS (NM_001312900.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_008077.5
|nearest_promoter_id=NM_008077.5
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000155979.8:40 AK054554:40 KM102984:41 AK148497:43 AK160868:44 AK136801:57 ENSMUST00000130604.8:-71 ENSMUST00000094934.11:-71 ENSMUST00000148210.8:73 BC027059:90 AF326548:91 AF326547:91 Z49976:173
|nearest_unigene=XM_006498766
|nearest_unigene=XM_006498766
|peak_score=1
|peak_score=1

Revision as of 01:05, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_15704.1
Species:mouse
Chr:chr2
Start:70392457
End:70392467
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2642845,EM10E1090314)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001312900.1:6
NM_008077.5:6
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000155979.8:40
  • AK054554:40
  • KM102984:41
  • AK148497:43
  • AK160868:44
  • AK136801:57
  • ENSMUST00000130604.8:-71
  • ENSMUST00000094934.11:-71
  • ENSMUST00000148210.8:73
  • BC027059:90
  • AF326548:91
  • AF326547:91
  • Z49976:173
view more...
Gene_name:Gad1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-11
Nearest PromoterID:NM_008077.5
Entrez ID:Gad1
Nearest Unigene:XM_006498766
Nearest Refseq:
Nearest Ensembl:
Gene Name:Gad1
Gene Alias:
Gene Type:
CpG%:0.100000
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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