TSS: Rfmm 159008.1: Difference between revisions

Revision as of 01:38, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_159008.1
Species:	mouse
Chr:	chr18

Start:	64794085
End:	64794134
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2592611,EM10E1068961)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001001488.3:14
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK036959:94 ENSMUST00000025482.10:-204 AK157316:-204 ENSMUST00000237686.2:207 AY506548:285 BC117946:287 view more...

Gene_name:	Atp8b1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-38
Nearest PromoterID:	NM_001001488.3
Entrez ID:	Atp8b1
Nearest Unigene:	NM_001001488
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Atp8b1
Gene Alias:
Gene Type:
CpG%:	0.122449
GC%:	0.780000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001001488.3:14 AK036959:94 ENSMUST00000025482.10:-204 AK157316:-204 ENSMUST00000237686.2:207 AY506548:285 BC117946:287
 |annotation=promoter-TSS (NM_001001488.3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001001488.3
 |nearest_refseq=
+|nearest_transcripts=AK036959:94 ENSMUST00000025482.10:-204 AK157316:-204 ENSMUST00000237686.2:207 AY506548:285 BC117946:287
 |nearest_unigene=NM_001001488
 |peak_score=1