TSS: Rfmm 159374.1: Difference between revisions

Revision as of 01:44, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_159374.1
Species:	mouse
Chr:	chr18

Start:	68067046
End:	68067063
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS,CTCF-bound (EM10D2593978,EM10E1069617)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Ldlrad4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	426
Nearest PromoterID:	XM_030250536.1
Entrez ID:	Ldlrad4
Nearest Unigene:	XM_030250537
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Ldlrad4
Gene Alias:
Gene Type:
CpG%:	0.058824
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (XM_006526086.4, exon 1 of 7)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_030250536.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_030250537
 |peak_score=1