TSS: Rfmm 170873.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AJ277831:11 NM_030688.2:-27 AK045976:-27 ENSMUST00000113063.8:-173 ENSMUST00000130879.2:235 AK039155:235 | |||
|annotation=promoter-TSS (NM_030688.2) | |annotation=promoter-TSS (NM_030688.2) | ||
|ccre_category=N | |ccre_category=N | ||
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|nearest_promoter_id=NM_030688.2 | |nearest_promoter_id=NM_030688.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=NM_030688.2:-27 AK045976:-27 ENSMUST00000113063.8:-173 ENSMUST00000130879.2:235 AK039155:235 | |||
|nearest_unigene=NM_030688 | |nearest_unigene=NM_030688 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 04:49, 14 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_030688.2 |
| Entrez ID: | Il1rapl2 |
| Nearest Unigene: | NM_030688 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Il1rapl2 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.