TSS: Rfmm 1989.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=promoter-TSS (NM_001310585.1)
|annotation=promoter-TSS (NM_001310585.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_025283.3
|nearest_promoter_id=NM_025283.3
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=NM_001310585
|nearest_unigene=NM_001310585
|peak_score=1
|peak_score=1

Revision as of 05:55, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_1989.1
TSS ID(Version3):mm_5921.1
Species:mouse
Chr:chr1
Start:55170143
End:55170288
Strand:-
Source datasetsFANTOM5|DRA000914
ProtocolCAGE|CAGE_and_CAGEscan
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2272308,EM10E0935870)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Mob4
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-189
    Nearest PromoterID:NM_025283.3
    Entrez ID:Mob4
    Nearest Unigene:NM_001310585
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Mob4
    Gene Alias:
    Gene Type:
    CpG%:0.075862
    GC%:0.630137
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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