TSS: Rfmm 20450.1: Difference between revisions

Revision as of 06:04, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_20450.1
Species:	mouse
Chr:	chr2

Start:	143704854
End:	143704870
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2663997,EM10E1098549)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000099296.4:0 AB003147:0 AK143180:0 AK053766:0
GeneID:	12075
HGNC/MGI_ID:	MGI:101770
UniProt_ID:	A2AMT1
Nearer transcript ids and distances:	ENSMUST00000028907.14:-223 NM_001291061.1:-223 NM_009751.2:-223 BC057580:-223 view more...

Gene_name:	Bfsp1
Gene_symbol:	Bfsp1
Gene_synonyms:	filensin
Gene_source:	MGI:101770

TATA-Box annotation

Distance to TSS:	231
Nearest PromoterID:	NM_009751.2
Entrez ID:	Bfsp1
Nearest Unigene:	XM_011239266
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Bfsp1
Gene Alias:
Gene Type:
CpG%:	0.187500
GC%:	0.823529
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENSMUST00000099296.4:0 AB003147:0 AK143180:0 AK053766:0 ENSMUST00000028907.14:-223 NM_001291061.1:-223 NM_009751.2:-223 BC057580:-223
 |annotation=promoter-TSS (XR_375038.5)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_009751.2
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000028907.14:-223 NM_001291061.1:-223 NM_009751.2:-223 BC057580:-223
 |nearest_unigene=XM_011239266
 |peak_score=1