TSS: Rfmm 23170.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AK187561:0 AK213035:0 AK197493:0 AK199682:0 AK180745:-65 AK190120:-131 AK193906:339 AK177731:339 AK188596:-385 AK197639:-385 AK187458:-435 | |||
|annotation=TTS (XR_004941010.1) | |annotation=TTS (XR_004941010.1) | ||
|ccre_category=N | |ccre_category=N | ||
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|nearest_promoter_id=XR_375265.5 | |nearest_promoter_id=XR_375265.5 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=AK180745:-65 AK190120:-131 AK193906:339 AK177731:339 AK188596:-385 AK197639:-385 AK187458:-435 | |||
|nearest_unigene=XR_375265 | |nearest_unigene=XR_375265 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=AK187561 AK213035 AK197493 | |transcript_name=AK187561 AK213035 AK197493 AK199682 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfmm_23170.1 | |tss_id=rfmm_23170.1 | ||
Revision as of 06:49, 14 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 11167 |
|---|---|
| Nearest PromoterID: | XR_375265.5 |
| Entrez ID: | Gm31852 |
| Nearest Unigene: | XR_375265 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gm31852 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.041667 |
| GC%: | 0.680000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.