TSS: Rfmm 23176.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000006587.7:0 ENSMUST00000125874.2:0 NM_145538.2:0 AK151326:0 AK170042:0 BC002270:0 AK088196:0 AK151705:0 ENSMUST00000125544.3:19 AK201529:125 | |||
|annotation=promoter-TSS (NM_145538.2) | |annotation=promoter-TSS (NM_145538.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_145538.2 | |nearest_promoter_id=NM_145538.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000125544.3:19 AK201529:125 | |||
|nearest_unigene=NM_145538 | |nearest_unigene=NM_145538 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000006587.7 ENSMUST00000125874.2 AK151326 AK170042 BC002270 AK088196 AK151705 | |transcript_name=ENSMUST00000006587.7 ENSMUST00000125874.2 NM_145538.2 AK151326 AK170042 BC002270 AK088196 AK151705 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfmm_23176.1 | |tss_id=rfmm_23176.1 | ||
Revision as of 06:49, 14 November 2024
Basic information about the TSS
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| Source datasets | GSE117655|DRA000914 | |||||||||||||
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| Protocol | deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2674124,EM10E1103347) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_145538.2 |
| Entrez ID: | Tmem189 |
| Nearest Unigene: | NM_145538 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Tmem189 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.210526 |
| GC%: | 0.792208 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.