TSS: Rfmm 31202.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000200490.5:0 ENSMUST00000043108.9:0 ENSMUST00000199888.5:0 ENSMUST00000196141.5:0 NM_197997.2:0 BC079891:0 BC082599:0 ENSMUST00000195955.2:121 BC085187:121 | |||
|annotation=promoter-TSS (NM_138593.2) | |annotation=promoter-TSS (NM_138593.2) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_197997.2 | |nearest_promoter_id=NM_197997.2 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000195955.2:121 BC085187:121 | |||
|nearest_unigene=XM_006502109 | |nearest_unigene=XM_006502109 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000200490.5 ENSMUST00000043108.9 ENSMUST00000199888.5 ENSMUST00000196141.5 BC079891 BC082599 | |transcript_name=ENSMUST00000200490.5 ENSMUST00000043108.9 ENSMUST00000199888.5 ENSMUST00000196141.5 NM_197997.2 BC079891 BC082599 | ||
|tss_cluster_detected=3 | |tss_cluster_detected=3 | ||
|tss_id=rfmm_31202.1 | |tss_id=rfmm_31202.1 | ||
Revision as of 08:58, 14 November 2024
Basic information about the TSS
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| Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
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| Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2711091,EM10E1118055) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_197997.2 |
| Entrez ID: | Zgrf1 |
| Nearest Unigene: | XM_006502109 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Zgrf1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.040816 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.