TSS: Rfmm 33.1: Difference between revisions

Revision as of 09:28, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_33.1
Species:	mouse
Chr:	chr1

Start:	4855996
End:	4856025
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2262721,EM10E0932275)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK020814:0
GeneID:	77942
HGNC/MGI_ID:	MGI:1925192
UniProt_ID:
Nearer transcript ids and distances:	LF214103:-100 MA449680:-100 LF214102:-200 MA449679:-200 view more...

Gene_name:	Mrpl15
Gene_symbol:	A930006A01Rik
Gene_synonyms:
Gene_source:	MGI:1925192

TATA-Box annotation

Distance to TSS:	-37
Nearest PromoterID:	XM_006495524.4
Entrez ID:	Mrpl15
Nearest Unigene:	XM_006495524
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mrpl15
Gene Alias:
Gene Type:
CpG%:	0.103448
GC%:	0.766667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK020814:0 LF214103:-100 MA449680:-100 LF214102:-200 MA449679:-200
 |annotation=promoter-TSS (NM_001177658.1)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_006495524.4
 |nearest_refseq=
+|nearest_transcripts=LF214103:-100 MA449680:-100 LF214102:-200 MA449679:-200
 |nearest_unigene=XM_006495524
 |peak_score=1