TSS: Rfmm 34717.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF271562:191 MA507139:191 ENSMUST00000151903.8:-295 AK044073:-297 ENSMUST00000086563.11:-300 NM_029086.2:-300 AK153576:-300 BC092543:-301 AK017931:-310 AK031727:-312 ENSMUST00000030015.6:-314 NM_001347095.1:-314 AK052584:-314 LF194384:-315 MA429961:-315
|annotation=intron (XR_390347.2, intron 1 of 5)
|annotation=intron (XR_390347.2, intron 1 of 5)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NM_029086.2
|nearest_promoter_id=NM_029086.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000151903.8:-295 AK044073:-297 ENSMUST00000086563.11:-300 NM_029086.2:-300 AK153576:-300 BC092543:-301 AK017931:-310 AK031727:-312 ENSMUST00000030015.6:-314 NM_001347095.1:-314 AK052584:-314 LF194384:-315 MA429961:-315
|nearest_unigene=XM_017320423
|nearest_unigene=XM_017320423
|peak_score=1
|peak_score=1

Revision as of 09:56, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_34717.1
Species:mouse
Chr:chr4
Start:46389104
End:46389123
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:pELS (EM10D2729358,EM10E1124286)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF271562:191
MA507139:191
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000151903.8:-295
  • AK044073:-297
  • ENSMUST00000086563.11:-300
  • NM_029086.2:-300
  • AK153576:-300
  • BC092543:-301
  • AK017931:-310
  • AK031727:-312
  • ENSMUST00000030015.6:-314
  • NM_001347095.1:-314
  • AK052584:-314
  • LF194384:-315
  • MA429961:-315
view more...
Gene_name:Trmo
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:310
Nearest PromoterID:NM_029086.2
Entrez ID:Trmo
Nearest Unigene:XM_017320423
Nearest Refseq:
Nearest Ensembl:
Gene Name:Trmo
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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