TSS: Rfmm 43823.1: Difference between revisions

Revision as of 12:25, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_43823.1
Species:	mouse
Chr:	chr5

Start:	31026922
End:	31026924
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2772546,EM10E1142880)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_144525.4:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000114716.4:51 ENSMUST00000202951.4:53 AK053521:53 ENSMUST00000202050.4:55 AK165285:55 BC022602:59 AK143078:66 AK034883:67 AK166510:76 BC029150:79 BC026651:151 view more...

Gene_name:	Tmem214
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_144525.4
Entrez ID:	Tmem214
Nearest Unigene:	XM_036165466
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Tmem214
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_144525.4:0 ENSMUST00000114716.4:51 ENSMUST00000202951.4:53 AK053521:53 ENSMUST00000202050.4:55 AK165285:55 BC022602:59 AK143078:66 AK034883:67 AK166510:76 BC029150:79 BC026651:151
 |annotation=promoter-TSS (NM_144525.4)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_144525.4
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000114716.4:51 ENSMUST00000202951.4:53 AK053521:53 ENSMUST00000202050.4:55 AK165285:55 BC022602:59 AK143078:66 AK034883:67 AK166510:76 BC029150:79 BC026651:151
 |nearest_unigene=XM_036165466
 |peak_score=1