TSS: Rfmm 47769.1: Difference between revisions

Revision as of 13:29, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_47769.1
Species:	mouse
Chr:	chr5

Start:	104170057
End:	104170076
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2791143,EM10E1149879)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK045775:250
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000031251.16:272 ENSMUST00000119025.2:353 AK049355:353 AK155202:375 AK155327:375 AK155174:381 AK170939:381 AK158327:381 AY053570:381 AK154803:382 NM_053262.3:395 BC038340:395 AF304306:413 view more...

Gene_name:	Hsd17b11
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-404
Nearest PromoterID:	NM_053262.3
Entrez ID:	Hsd17b11
Nearest Unigene:	NM_053262
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Hsd17b11
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.450000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK045775:250 ENSMUST00000031251.16:272 ENSMUST00000119025.2:353 AK049355:353 AK155202:375 AK155327:375 AK155174:381 AK170939:381 AK158327:381 AY053570:381 AK154803:382 NM_053262.3:395 BC038340:395 AF304306:413
 |annotation=promoter-TSS (NM_053262.3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_053262.3
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000031251.16:272 ENSMUST00000119025.2:353 AK049355:353 AK155202:375 AK155327:375 AK155174:381 AK170939:381 AK158327:381 AY053570:381 AK154803:382 NM_053262.3:395 BC038340:395 AF304306:413
 |nearest_unigene=NM_053262
 |peak_score=1