TSS: Hg 105572.1: Difference between revisions

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Line 10: Line 10:
|distance_to_tss=-222
|distance_to_tss=-222
|end=73997895
|end=73997895
|end_of_center_position=73997892
|entrez_id=7414
|entrez_id=7414
|gc_percent=0.741294
|gc_percent=0.741294
|gene_alias=CMD1W|CMH15|HEL114|MV|MVCL
|gene_alias=CMD1W
|gene_description=vinculin
|gene_description=vinculin
|gene_id=7414
|gene_id=7414
Line 28: Line 29:
|species=human
|species=human
|start=73997888
|start=73997888
|start_of_center_position=73997891
|strand=+
|strand=+
|tata_box="-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00)"
|tata_box="-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00)"

Revision as of 05:15, 12 May 2019

Basic information about the TSS

TSS ID:hg_105572.1
Species:human
Chr:chr10
Start:73997888
End:73997895
Strand:+
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 16)



Gene and protein annotation

Transcript_name:ENST00000624354.3 ENST00000211998.8 ENST00000372755.7 NM_014000 NM_003373 uc010qky.2 uc001jwd.4 uc001jwe.4 AK304823 EU794673
Distance:219
GeneID:7414
HGNC/MGI_ID:HGNC:12665
UniProt_ID:A0A024QZN4 A0A096LPE1 B4E3Q9 P18206 V9HWK2
Gene_name:vinculin
Gene_symbol:VCL
Gene_synonyms:
Gene_source:HGNC:12665



TATA-Box annotation

Distance to TSS:-222
Nearest PromoterID:NM_003373
Entrez ID:7414
Nearest Unigene:Hs.643896
Nearest Refseq:NM_003373
Nearest Ensembl:ENSG00000035403
Gene Name:vinculin
Gene Alias:CMD1W
Gene Description:vinculin
Gene Type:protein-coding
CpG%:0.105
GC%:0.741294
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00)"



TSS expression

Expression data not found.

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