TSS: Rfmm 5516.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_001379354.1:0 ENSMUST00000112639.8:-130 AK078769:-130
|annotation=promoter-TSS (NM_001379354.1)
|annotation=promoter-TSS (NM_001379354.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_001379354.1
|nearest_promoter_id=NM_001379354.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000112639.8:-130 AK078769:-130
|nearest_unigene=NM_001379354
|nearest_unigene=NM_001379354
|peak_score=1
|peak_score=1

Revision as of 15:29, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_5516.1
Species:mouse
Chr:chr1
Start:120197984
End:120198023
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS (EM10D2287614,EM10E0941930)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001379354.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000112639.8:-130
  • AK078769:-130
view more...
Gene_name:Steap3
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-3
Nearest PromoterID:NM_001379354.1
Entrez ID:Steap3
Nearest Unigene:NM_001379354
Nearest Refseq:
Nearest Ensembl:
Gene Name:Steap3
Gene Alias:
Gene Type:
CpG%:0.025641
GC%:0.475000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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