TSS: Rfmm 58094.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_007638.4:3 ENSMUST00000032078.9:12 AK168087:489
|annotation=promoter-TSS (NM_001163427.1)
|annotation=promoter-TSS (NM_001163427.1)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_007638.4
|nearest_promoter_id=NM_007638.4
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=ENSMUST00000032078.9:12 AK168087:489
|nearest_unigene=NM_007638
|nearest_unigene=NM_007638
|peak_score=1
|peak_score=1

Revision as of 16:16, 14 November 2024

Basic information about the TSS

TSS ID:rfmm_58094.1
Species:mouse
Chr:chr6
Start:85428471
End:85428484
Strand:+
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2006851,EM10E0825532)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_007638.4:3
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000032078.9:12
  • AK168087:489
view more...
Gene_name:Cct7
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-10
Nearest PromoterID:NM_007638.4
Entrez ID:Cct7
Nearest Unigene:NM_007638
Nearest Refseq:
Nearest Ensembl:
Gene Name:Cct7
Gene Alias:
Gene Type:
CpG%:0.153846
GC%:0.857143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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