TSS: Mm 155548.1: Difference between revisions

Revision as of 10:42, 14 May 2019

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

Transcript_name:	ENSMUST00000136114.7 ENSMUST00000004326.3 NM_008883 uc009too.1 uc012hku.1
Distance:	0
GeneID:	18846
HGNC/MGI_ID:	MGI:107683
UniProt_ID:	P70208 P70208-2 Q571A4

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_008883
Entrez ID:	18846
Nearest Unigene:	Mm.1685
Nearest Refseq:	NM_008883
Nearest Ensembl:	ENSMUSG00000031398
Gene Name:	plexin A3
Gene Alias:	PlexA3
Gene Description:	plexin A3
Gene Type:	protein-coding
CpG%:	0.095
GC%:	0.731343
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	"-36(GGGTTTAAAAGG,-,0.00),-34(GTTTAAAAGGCC,+,0.00)"

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|Plxa3=
+|Plxn3=
+|Plxn4=
+|SEX=
 |all_trans=ENSMUST00000136114.7:0 ENSMUST00000004326.3:0 NM_008883:0 uc009too.1:0 uc012hku.1:0 BC093482:7 D86950:25
 |chr=chrX
@@ Line 6: / Line 10: @@
 |distance_to_tss=1
 |end=74329076
+|end_of_center_position=74329068
 |entrez_id=18846
 |gc_percent=0.731343
-|gene_alias=PlexA3|Plxa3|Plxn3|Plxn4|SEX|mKIAA4078
+|gene_alias=PlexA3
 |gene_description=plexin A3
 |gene_id=18846
@@ Line 17: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=MGI:107683
+|mKIAA4078=
 |nearest_ensembl=ENSMUSG00000031398
 |nearest_promoter_id=NM_008883
@@ Line 24: / Line 30: @@
 |species=mouse
 |start=74329058
+|start_of_center_position=74329067
 |strand=+
 |tata_box="-36(GGGTTTAAAAGG,-,0.00),-34(GTTTAAAAGGCC,+,0.00)"