TSS: Rfmm 64411.1: Difference between revisions

Revision as of 17:58, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_64411.1
Species:	mouse
Chr:	chr7

Start:	19197193
End:	19197217
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2045482,EM10E0842847)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001370800.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENSMUST00000137613.9:39

Gene_name:	Exoc3l2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-7
Nearest PromoterID:	NM_001370800.1
Entrez ID:	Exoc3l2
Nearest Unigene:	NM_001370800
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Exoc3l2
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.520000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001370800.1:0 ENSMUST00000137613.9:39
 |annotation=promoter-TSS (NM_001370800.1)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001370800.1
 |nearest_refseq=
+|nearest_transcripts=ENSMUST00000137613.9:39
 |nearest_unigene=NM_001370800
 |peak_score=1