TSS: Rfmm 75553.1: Difference between revisions

Revision as of 21:02, 14 November 2024

Basic information about the TSS

TSS ID:	rfmm_75553.1
Species:	mouse
Chr:	chr7

Start:	143181786
End:	143181800
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2896484,EM10E1196077)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_153817.2:0 NR_153818.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	KY468172:7 ENSMUST00000207959.2:11 AK054221:11 ENSMUST00000208797.2:-25 AK037811:-25 LF196731:-26 MA432308:-26 AK154738:216 ENSMUST00000207189.2:218 AK155734:218 LF297062:335 MA532639:335 view more...

Gene_name:	E230032D23Rik
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NR_153818.2
Entrez ID:	E230032D23Rik
Nearest Unigene:	NR_153817
Nearest Refseq:
Nearest Ensembl:
Gene Name:	E230032D23Rik
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_153817.2:0 NR_153818.2:0 KY468172:7 ENSMUST00000207959.2:11 AK054221:11 ENSMUST00000208797.2:-25 AK037811:-25 LF196731:-26 MA432308:-26 AK154738:216 ENSMUST00000207189.2:218 AK155734:218 LF297062:335 MA532639:335
 |annotation=promoter-TSS (NM_175649.5)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_153818.2
 |nearest_refseq=
+|nearest_transcripts=KY468172:7 ENSMUST00000207959.2:11 AK054221:11 ENSMUST00000208797.2:-25 AK037811:-25 LF196731:-26 MA432308:-26 AK154738:216 ENSMUST00000207189.2:218 AK155734:218 LF297062:335 MA532639:335
 |nearest_unigene=NR_153817
 |peak_score=1