TSS: Rfmm 93460.1: Difference between revisions

Revision as of 01:56, 15 November 2024

Basic information about the TSS

TSS ID:	rfmm_93460.1
Species:	mouse
Chr:	chr10

Start:	8821026
End:	8821038
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D1134559,EM10E0467129)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK084677:-9
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Sash1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	231
Nearest PromoterID:	XM_006512837.4
Entrez ID:	Sash1
Nearest Unigene:	XM_006512841
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Sash1
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.461538
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK084677:-9
 |annotation=TTS (XR_004936446.1)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_006512837.4
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_006512841
 |peak_score=1