TSS: Rfmm 98103.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENSMUST00000130762.2:0 BC049656:0 AK015088:0 ENSMUST00000020456.5:-15 BC145589:-15 BC139256:-15 BC145960:-15 NM_001014836.3:-19 AK196998:-417 AK179058:-422 AK208485:-422 AK190029:-422 AK201601:-422 AK196377:469 | |||
|annotation=promoter-TSS (NM_001014836.3) | |annotation=promoter-TSS (NM_001014836.3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001014836.3 | |nearest_promoter_id=NM_001014836.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_transcripts=ENSMUST00000020456.5:-15 BC145589:-15 BC139256:-15 BC145960:-15 NM_001014836.3:-19 AK196998:-417 AK179058:-422 AK208485:-422 AK190029:-422 AK201601:-422 AK196377:469 | |||
|nearest_unigene=NM_001014836 | |nearest_unigene=NM_001014836 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 03:12, 15 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D2332563,EM10E0960974) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_001014836.3 |
| Entrez ID: | 4930404N11Rik |
| Nearest Unigene: | NM_001014836 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | 4930404N11Rik |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.647059 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.