TSS: Rfmm 99322.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=dELS
|ccre_category=dELS
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|nearest_promoter_id=XR_001779846.2
|nearest_promoter_id=XR_001779846.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=XR_001779846
|nearest_unigene=XR_001779846
|peak_score=1
|peak_score=1

Revision as of 03:32, 15 November 2024

Basic information about the TSS


TSS ID:rfmm_99322.1
Species:mouse
Chr:chr10
Start:96102494
End:96102502
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:dELS (EM10D1181840,EM10E0486231)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Gm40747
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-7728
    Nearest PromoterID:XR_001779846.2
    Entrez ID:Gm40747
    Nearest Unigene:XR_001779846
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Gm40747
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.555556
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):