TSS: Rfmm 9964.1: Difference between revisions

Revision as of 03:37, 15 November 2024

Basic information about the TSS

TSS ID:	rfmm_9964.1
Species:	mouse
Chr:	chr1

Start:	178162892
End:	178162892
Strand:	-

Source datasets

DRA000914

Protocol

CAGE_and_CAGEscan

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D1119179,EM10E0461200)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Hnrnpu
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2488
Nearest PromoterID:	NR_149827.1
Entrez ID:	Hnrnpu
Nearest Unigene:	NM_016805
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Hnrnpu
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (XM_036152317.1, intron 3 of 15)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_149827.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NM_016805
 |peak_score=1