TSS: Rfmm 99830.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=intron (XM_036155782.1, intron 1 of 22)
|annotation=intron (XM_036155782.1, intron 1 of 22)
|ccre_category=dELS
|ccre_category=dELS
Line 25: Line 26:
|nearest_promoter_id=NR_162778.1
|nearest_promoter_id=NR_162778.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=NR_162778
|nearest_unigene=NR_162778
|peak_score=1
|peak_score=1

Revision as of 03:40, 15 November 2024

Basic information about the TSS

TSS ID:rfmm_99830.1
Species:mouse
Chr:chr10
Start:111026177
End:111026185
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:dELS (EM10D1188075,EM10E0488038)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Gm51266
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:4690
    Nearest PromoterID:NR_162778.1
    Entrez ID:Gm51266
    Nearest Unigene:NR_162778
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Gm51266
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.666667
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfmm_99830.1&oldid=3569157"