TSS: Rfmm 99878.1: Difference between revisions

Revision as of 03:40, 15 November 2024

Basic information about the TSS

TSS ID:	rfmm_99878.1
Species:	mouse
Chr:	chr10

Start:	111309824
End:	111309827
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	pELS,CTCF-bound (EM10D2341202,EM10E0964335)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Nap1l1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	737
Nearest PromoterID:	NM_015781.5
Entrez ID:	Nap1l1
Nearest Unigene:	XM_036155892
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Nap1l1
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.250000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (XR_001779558.2, intron 1 of 12)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_015781.5
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=XM_036155892
 |peak_score=1