TSS: Rfhg 12473.1: Difference between revisions

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|gene_description=phosphatidylinositol-4-phosphate 5-kinase type 1 alpha
|gene_description=phosphatidylinositol-4-phosphate 5-kinase type 1 alpha
|gene_id=8394
|gene_id=8394
|gene_name=PIP5K1A
|gene_name=phosphatidylinositol-4-phosphate 5-kinase type 1 alpha
|gene_source=HGNC:8994
|gene_source=HGNC:8994
|gene_symbol=PIP5K1A
|gene_symbol=PIP5K1A
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000349792.9 ENST00000409426.5 ENST00000368888.9 ENST00000441902.6 ENST00000368890.8 ENST00000424999.1 NM_001135637.2 NM_003557.3 NM_001135636.2 NM_001330689.2 NM_001135638.2 AK309826 AK295691 BC007833 U78576 BC007005 U78577 U78575 AK291015
|transcript_name=ENST00000349792.9 ENST00000409426.5 ENST00000368888.9 ENST00000441902.6 ENST00000368890.8 ENST00000424999.1 AK309826 AK295691 BC007833 U78576 U78577 U78575 AK291015
|tss_cluster_detected=15
|tss_cluster_detected=15
|tss_id=rfhg_12473.1
|tss_id=rfhg_12473.1

Latest revision as of 18:44, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_12473.1
TSS ID(Version3):hg_5216.1
Species:human
Chr:chr1
Start:151198523
End:151198607
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJNA4843412|DRA013844
|PRJNA615891|PRJNA401781|PRJNA548673|PRJDB5282|PRJNA597322
ProtocolCAGE|TSS_database|NETCAGE|SLIC_CAGE|RAMPAGE|ReCappable-seq
|oligo_capping|C1CAGE|STRIPE-seq|TIF-seq2
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2221891,EH38E1384138)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000349792.9:0
ENST00000409426.5:0
ENST00000368888.9:0
ENST00000441902.6:0
ENST00000368890.8:0
ENST00000424999.1:0
AK309826:0
AK295691:0
BC007833:0
U78576:0
U78577:0
U78575:0
AK291015:0
GeneID:8394
HGNC/MGI_ID:HGNC:8994
UniProt_ID:A6PW56 A6PW57 Q99755
Nearer transcript ids and distances:
  • ENST00000454769.2:118
  • CU675819:390
  • KJ897839:390
  • KJ905346:390
  • AB590546:390
view more...
Gene_name:phosphatidylinositol-4-phosphate 5-kinase type 1 alpha
Gene_symbol:PIP5K1A
Gene_synonyms:
Gene_source:HGNC:8994



TATA-Box annotation

Distance to TSS:13
Nearest PromoterID:NM_001135636
Entrez ID:8394
Nearest Unigene:Hs.655131
Nearest Refseq:NM_003557
Nearest Ensembl:ENSG00000143398
Gene Name:phosphatidylinositol-4-phosphate 5-kinase type 1 alpha
Gene Alias:-
Gene Type:protein-coding
CpG%:0.107143
GC%:0.623529
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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