TSS: Hg 102648.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=40903 |entrez_id=203245 |gc_percent=0.547264 |gene_alias=C9orf90|bA379C10.2 |gene_description=nuclear apoptosis inducing factor...") |
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{{TSSDetail | {{TSSDetail | ||
|bA379C10.2= | |||
|chr=chr9 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance= | |||
|distance_to_tss=40903 | |distance_to_tss=40903 | ||
|end=128026422 | |||
|entrez_id=203245 | |entrez_id=203245 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
Line 12: | Line 16: | ||
|nearest_refseq=NM_197956 | |nearest_refseq=NM_197956 | ||
|nearest_unigene=Hs.373606 | |nearest_unigene=Hs.373606 | ||
|num_trans=0 | |||
|species=human | |||
|start=128026412 | |||
|strand=- | |||
|tata_box="-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00)" | |tata_box="-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102648.1 | |tss_id=hg_102648.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 19:35, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 40903 |
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Nearest PromoterID: | NM_197956 |
Entrez ID: | 203245 |
Nearest Unigene: | Hs.373606 |
Nearest Refseq: | NM_197956 |
Nearest Ensembl: | ENSG00000171169 |
Gene Name: | NAIF1 |
Gene Alias: | C9orf90 |
Gene Description: | nuclear apoptosis inducing factor 1 |
Gene Type: | protein-coding |
CpG%: | 0.03 |
GC%: | 0.547264 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00)" |