TSS: Rfhg 139676.1: Difference between revisions

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|gene_description=spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
|gene_description=spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
|gene_id=9092
|gene_id=9092
|gene_name=SART1
|gene_name=spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
|gene_source=HGNC:10538
|gene_source=HGNC:10538
|gene_symbol=SART1
|gene_symbol=SART1
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000532333.5 ENST00000529532.5 ENST00000528573.1 ENST00000530251.1 ENST00000312397.10 NM_005146.5 AK309104 AK297589 AK223016 AK293200 AK298184 BC001058 AB006198 AF353625
|transcript_name=ENST00000532333.5 ENST00000529532.5 ENST00000528573.1 ENST00000530251.1 ENST00000312397.10 AK309104 AK297589 AK223016 AK293200 AK298184 BC001058 AB006198 AF353625
|tss_cluster_detected=12
|tss_cluster_detected=12
|tss_id=rfhg_139676.1
|tss_id=rfhg_139676.1

Latest revision as of 23:29, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_139676.1
TSS ID(Version3):hg_115259.1
Species:human
Chr:chr11
Start:65961679
End:65961764
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|PRJNA4843412|DRA013844|PRJNA401781
|PRJNA548673|PRJNA615891|PRJNA597322
ProtocolCAGE|TSS_database|TSS-seq|NETCAGE|ReCappable-seq|SLIC_CAGE
|TIF-seq2|oligo_capping|STRIPE-seq
TSS cluster detected*12

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2460422,EH38E1545762)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000532333.5:0
ENST00000529532.5:0
ENST00000528573.1:0
ENST00000530251.1:0
ENST00000312397.10:0
AK309104:0
AK297589:0
AK223016:0
AK293200:0
AK298184:0
BC001058:0
AB006198:0
AF353625:0
GeneID:9092
HGNC/MGI_ID:HGNC:10538
UniProt_ID:B4DDH9 B4DMR4 B4DP43 E9PQI8 O43290
Nearer transcript ids and distances:
  • DQ891694:12
  • EU176645:12
  • BT006637:17
  • Y14314:146
  • BX648500:272
view more...
Gene_name:spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
Gene_symbol:SART1
Gene_synonyms:Ara1 HAF SNRNP110 Snu66
Gene_source:HGNC:10538



TATA-Box annotation

Distance to TSS:-13
Nearest PromoterID:NM_005146
Entrez ID:9092
Nearest Unigene:Hs.502883
Nearest Refseq:NM_005146
Nearest Ensembl:ENSG00000175467
Gene Name:spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
Gene Alias:Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66
Gene Type:protein-coding
CpG%:0.129412
GC%:0.651163
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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