TSS: Rfhg 171439.1: Difference between revisions

Latest revision as of 09:33, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_171439.1
Species:	human
Chr:	chr15

Start:	20506194
End:	20506194
Strand:	-

Source datasets

DRA000914

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000430598.5:14 BC033888:14 BC094757:14
GeneID:	283755
HGNC/MGI_ID:	HGNC:4871
UniProt_ID:
Nearer transcript ids and distances:	ENST00000414804.5:23 ENST00000428453.5:33 BC070076:33 view more...

Gene_name:	HERC2 pseudogene 3
Gene_symbol:	HERC2P3
Gene_synonyms:	D15F37S4 LOC283755
Gene_source:	HGNC:4871

TATA-Box annotation

Distance to TSS:	-14
Nearest PromoterID:	NR_036432
Entrez ID:	283755
Nearest Unigene:	Hs.608918
Nearest Refseq:	NM_001024682
Nearest Ensembl:	ENSG00000180229
Gene Name:	HERC2 pseudogene 3
Gene Alias:	D15F37S4
Gene Type:	pseudo
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=hect domain and RLD 2 pseudogene 3
 |gene_id=283755
-|gene_name=HERC2P3
+|gene_name=HERC2 pseudogene 3
 |gene_source=HGNC:4871
 |gene_symbol=HERC2P3
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000430598.5 NR_036432.1 BC033888 BC094757
+|transcript_name=ENST00000430598.5 BC033888 BC094757
 |tss_cluster_detected=1
 |tss_id=rfhg_171439.1