TSS: Rfhg 18215.1: Difference between revisions

Latest revision as of 12:52, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_18215.1
Species:	human
Chr:	chr1

Start:	202810849
End:	202810851
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2263613,EH38E1412956)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_046326.1:95 NR_046325.1:95
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000553157.1:103 ENST00000660963.1:104 ENST00000417262.5:111 ENST00000425295.1:111 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-96
Nearest PromoterID:	NR_046325
Entrez ID:	100506696
Nearest Unigene:	Hs.23459
Nearest Refseq:	NR_046325
Nearest Ensembl:	ENSG00000228288
Gene Name:
Gene Alias:	KDM5B-AS1\|KDM5BAS1\|PCAN-R1\|ncRNA-a2\|onco-lncRNA-96
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 16: / Line 16: @@
 |gene_description=prostate cancer associated transcript 6
 |gene_id=
-|gene_name=PCAT6
+|gene_name=
 |gene_source=
 |gene_symbol=