TSS: Rfhg 190438.1: Difference between revisions

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|gene_description=TNF receptor superfamily member 13B
|gene_description=TNF receptor superfamily member 13B
|gene_id=23495 96597
|gene_id=23495 96597
|gene_name=TNFRSF13B
|gene_name=TBC1 domain family member 27, pseudogene; TNF receptor superfamily member 13B
|gene_source=HGNC:18153 HGNC:28104
|gene_source=HGNC:18153 HGNC:28104
|gene_symbol=TBC1D27P TNFRSF13B
|gene_symbol=TBC1D27P TNFRSF13B
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000584950.5 ENST00000582931.5 ENST00000579315.5 ENST00000261652.7 ENST00000583789.1 ENST00000581616.2 NM_012452.3 AK303298 AF023614 AK223453 BC109392 AY302137 AK313302 KJ902345 KR711554 KR711555 KR711556 KR711557 KR712223 KR712231 KR712232 AK301032
|transcript_name=ENST00000584950.5 ENST00000582931.5 ENST00000579315.5 ENST00000261652.7 ENST00000583789.1 ENST00000581616.2 AK303298 AF023614 AK223453 BC109392 AY302137 AK313302 KR711554 KR711555 KR711556 KR711557 KR712223 KR712231 KR712232 AK301032
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_190438.1
|tss_id=rfhg_190438.1

Latest revision as of 15:28, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_190438.1
Species:human
Chr:chr17
Start:16972058
End:16972133
Strand:-
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D2913774,EH38E1849632)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000584950.5:0
ENST00000582931.5:0
ENST00000579315.5:0
ENST00000261652.7:0
ENST00000583789.1:0
ENST00000581616.2:0
AK303298:0
AF023614:0
AK223453:0
BC109392:0
AY302137:0
AK313302:0
KR711554:0
KR711555:0
KR711556:0
KR711557:0
KR712223:0
KR712231:0
KR712232:0
AK301032:0
GeneID:23495 96597
HGNC/MGI_ID:HGNC:18153 HGNC:28104
UniProt_ID:B4E0B0 E7ER05 J3QR67 O14836 Q4ACX1 Q53F36
Nearer transcript ids and distances:
    Gene_name:TBC1 domain family member 27, pseudogene; TNF receptor superfamily member 13B
    Gene_symbol:TBC1D27P TNFRSF13B
    Gene_synonyms:CD267 IGAD2 TACI
    Gene_source:HGNC:18153 HGNC:28104



    TATA-Box annotation

    Distance to TSS:-7
    Nearest PromoterID:NM_012452
    Entrez ID:23495
    Nearest Unigene:Hs.158341
    Nearest Refseq:NM_012452
    Nearest Ensembl:ENSG00000240505
    Gene Name:TBC1 domain family member 27, pseudogene; TNF receptor superfamily member 13B
    Gene Alias:CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B
    Gene Type:protein-coding
    CpG%:0.013333
    GC%:0.486842
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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