TSS: Rfhg 196154.1: Difference between revisions

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|gene_description=serine carboxypeptidase 1
|gene_description=serine carboxypeptidase 1
|gene_id=59342
|gene_id=59342
|gene_name=SCPEP1
|gene_name=serine carboxypeptidase 1
|gene_source=HGNC:29507
|gene_source=HGNC:29507
|gene_symbol=SCPEP1
|gene_symbol=SCPEP1
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000575423.5 ENST00000571345.5 ENST00000572591.5 ENST00000262288.8 ENST00000572710.5 ENST00000575395.5 ENST00000573823.5 ENST00000576154.5 ENST00000571898.5 ENST00000631024.1 NM_021626.3 AY358559 AF282618 AK027373 BC010078 AK298161 CU687218 KJ903029 HQ447580 KJ894483 BC072405
|transcript_name=ENST00000575423.5 ENST00000571345.5 ENST00000572591.5 ENST00000262288.8 ENST00000572710.5 ENST00000575395.5 ENST00000573823.5 ENST00000576154.5 ENST00000571898.5 ENST00000631024.1 AY358559 AF282618 AK027373 BC010078 AK298161 CU687218 HQ447580 BC072405
|tss_cluster_detected=14
|tss_cluster_detected=14
|tss_id=rfhg_196154.1
|tss_id=rfhg_196154.1

Latest revision as of 17:17, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_196154.1
TSS ID(Version3):hg_161826.1
Species:human
Chr:chr17
Start:56978089
End:56978161
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJDB5282|PRJNA4843412
|DRA013844|PRJNA401781|PRJNA548673|PRJNA615891
ProtocolCAGE|TSS_database|C1CAGE|NETCAGE|RAMPAGE|oligo_capping
|ReCappable-seq|SLIC_CAGE|TIF-seq2
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2945402,EH38E1872751)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000575423.5:0
ENST00000571345.5:0
ENST00000572591.5:0
ENST00000262288.8:0
ENST00000572710.5:0
ENST00000575395.5:0
ENST00000573823.5:0
ENST00000576154.5:0
ENST00000571898.5:0
ENST00000631024.1:0
AY358559:0
AF282618:0
AK027373:0
BC010078:0
AK298161:0
CU687218:0
HQ447580:0
BC072405:0
GeneID:59342
HGNC/MGI_ID:HGNC:29507
UniProt_ID:B4DP22 I3L195 I3L2N6 I3L4Z3 I3L506 Q9HB40
Nearer transcript ids and distances:
  • AF113214:21
Gene_name:serine carboxypeptidase 1
Gene_symbol:SCPEP1
Gene_synonyms:RISC
Gene_source:HGNC:29507



TATA-Box annotation

Distance to TSS:18
Nearest PromoterID:NM_021626
Entrez ID:59342
Nearest Unigene:Hs.514950
Nearest Refseq:NM_021626
Nearest Ensembl:ENSG00000121064
Gene Name:serine carboxypeptidase 1
Gene Alias:HSCP1|RISC
Gene Type:protein-coding
CpG%:0.111111
GC%:0.671233
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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