TSS: Rfhg 209907.1: Difference between revisions

Latest revision as of 21:39, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_209907.1
Species:	human
Chr:	chr19

Start:	19663665
End:	19663693
Strand:	-

Source datasets

PRJNA548673|PRJNA401781|PRJNA615891|PRJNA4843412|DRA013844

Protocol

CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE

TSS cluster detected^*

6

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3049606,EH38E1945467)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000357324.11:0 ENST00000487364.1:0 AK056420:0 AB385506:0
GeneID:	57130
HGNC/MGI_ID:	HGNC:24215
UniProt_ID:	A0A024R7N2
Nearer transcript ids and distances:	AB058728:1 AK026044:-376 ENST00000455627.1:433 view more...

Gene_name:	ATPase 13A1
Gene_symbol:	ATP13A1
Gene_synonyms:	CGI-152 FLJ31858 KIAA1825
Gene_source:	HGNC:24215

TATA-Box annotation

Distance to TSS:	-3
Nearest PromoterID:	NM_020410
Entrez ID:	57130
Nearest Unigene:	Hs.501794
Nearest Refseq:	NM_020410
Nearest Ensembl:	ENSG00000105726
Gene Name:	ATPase 13A1
Gene Alias:	ATP13A\|CGI-152
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.620690
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=ATPase 13A1
 |gene_id=57130
-|gene_name=ATP13A1
+|gene_name=ATPase 13A1
 |gene_source=HGNC:24215
 |gene_symbol=ATP13A1
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000357324.11 ENST00000487364.1 NM_020410.3 AK056420 AB385506
+|transcript_name=ENST00000357324.11 ENST00000487364.1 AK056420 AB385506
 |tss_cluster_detected=6
 |tss_id=rfhg_209907.1