TSS: Rfhg 228001.1: Difference between revisions

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|gene_description=V-set pre-B cell surrogate light chain 1
|gene_description=V-set pre-B cell surrogate light chain 1
|gene_id=
|gene_id=
|gene_name=VPREB1
|gene_name=immunoglobulin lambda variable 10-54
|gene_source=HGNC:5884
|gene_source=HGNC:5884
|gene_symbol=IGLV10-54
|gene_symbol=IGLV10-54

Latest revision as of 03:07, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_228001.1
Species:human
Chr:chr22
Start:22214766
End:22214771
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D3355179,EH38E2151740)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390287.2:23
GeneID:
HGNC/MGI_ID:HGNC:5884
UniProt_ID:A0A075B6I4
Nearer transcript ids and distances:
  • MK901628:36
  • L29113:60
  • KJ423488:205
  • AM181372:205
  • AY043141:205
  • AY043127:205
  • MG524723:205
  • MK308862:205
  • MN292690:205
  • MN294014:205
  • MN292624:205
  • MN292853:205
  • MN293137:205
  • MN293873:205
  • MN289889:205
  • MN278499:205
  • MN287717:205
  • MN290364:205
  • MN290451:205
  • MN290507:205
  • MN293239:205
  • MN293705:205
  • MN277563:205
  • MN289919:205
  • MN293651:205
  • AY487924:213
  • AJ408284:213
  • DQ098689:213
  • KT371173:213
  • KM067802:213
  • MN278119:213
  • MN445847:213
view more...
Gene_name:immunoglobulin lambda variable 10-54
Gene_symbol:IGLV10-54
Gene_synonyms:
Gene_source:HGNC:5884



TATA-Box annotation

Distance to TSS:-30018
Nearest PromoterID:NM_007128
Entrez ID:7441
Nearest Unigene:Hs.247979
Nearest Refseq:NM_007128
Nearest Ensembl:ENSG00000169575
Gene Name:immunoglobulin lambda variable 10-54
Gene Alias:CD179a|IGI|IGVPB|VPREB
Gene Type:protein-coding
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "MK901628:36 L29113:60 KJ423488:205 AM181372:205 AY043141:205 AY043127:205 MG524723:205 MK308862:205 MN292690:205 MN294014:205 MN292624:205 MN292853:205 MN293137:205 MN293873:205 MN289889:205 MN278499:205 MN287717:205 MN290364:205 MN290451:205 MN290507:205 MN293239:205 MN293705:205 MN277563:205 MN289919:205 MN293651:205 AY487924:213 AJ408284:213 DQ098689:213 KT371173:213 KM067802:213 MN278119:213 MN445847:213" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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