TSS: Hg 100071.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=211 |entrez_id=158219 |gc_percent=0.666667 |gene_alias=C9orf52 |gene_description=tetratricopeptide repeat domain 39B |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ905020:21 ENST00000506891.1:-56 uc064sez.1:-56 BC070139:-56 AK301185:-58 AK298581:-62 AK091187:-93 AK298998:-179 BC142985:-183 ENST00000512701.6:-207 ENST00000380850.8:-207 ENST00000297615.9:-207 ENST00000505732.5:-207 NM_001168340:-207 NM_001168339:-207 NM_001168341:-207 NM_152574:-207 uc003zlr.3:-207 uc011lmr.3:-207 uc011lmq.3:-207 uc010mif.3:-207 AK310482:-207 | |||
|chr=chr9 | |||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=21 | |||
|distance_to_tss=211 | |distance_to_tss=211 | ||
|end=15307153 | |||
|entrez_id=158219 | |entrez_id=158219 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
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|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
|num_trans=22 | |||
|species=human | |||
|start=15307145 | |||
|strand=- | |||
|transcript_name=KJ905020 | |||
|tss_classification=yes | |||
|tss_id=hg_100071.1 | |tss_id=hg_100071.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:00, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 211 |
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| Nearest PromoterID: | NM_001168341 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | TTC39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |