TSS: Mm 172794.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=M87321:-14 ENSMUST00000199782.1:-22 BC052646:-36 ENSMUST00000197460.4:-41 AK133730:-41 AK163969:-41 ENSMUST00000035075.12:-105 NM_011562:-105 uc009rvg.1...") |
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| Line 3: | Line 3: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|cripto= | |||
|distance=-14 | |distance=-14 | ||
|distance_to_tss=106 | |distance_to_tss=106 | ||
|end=110946053 | |end=110946053 | ||
|end_of_center_position=110946052 | |||
|entrez_id=21667 | |entrez_id=21667 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=CR1 | |gene_alias=CR1 | ||
|gene_description=teratocarcinoma-derived growth factor 1 | |gene_description=teratocarcinoma-derived growth factor 1 | ||
|gene_id=21667 | |gene_id=21667 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=110946050 | |start=110946050 | ||
|start_of_center_position=110946051 | |||
|strand=- | |strand=- | ||
|tata_box="-77(TTCTTTTAAGGG,-,0.00),-76(TCTTTTAAGGGA,+,0.00),-75(CTTTTAAGGGAG,+,0.00)" | |tata_box="-77(TTCTTTTAAGGG,-,0.00),-76(TCTTTTAAGGGA,+,0.00),-75(CTTTTAAGGGAG,+,0.00)" | ||
Revision as of 06:22, 14 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 106 |
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| Nearest PromoterID: | NM_011562 |
| Entrez ID: | 21667 |
| Nearest Unigene: | Mm.5090 |
| Nearest Refseq: | NM_011562 |
| Nearest Ensembl: | ENSMUSG00000032494 |
| Gene Name: | teratocarcinoma-derived growth factor 1 |
| Gene Alias: | CR1 |
| Gene Description: | teratocarcinoma-derived growth factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-77(TTCTTTTAAGGG,-,0.00),-76(TCTTTTAAGGGA,+,0.00),-75(CTTTTAAGGGAG,+,0.00)" |
TSS expression
Expression data not found.