TSS: Rfhg 235931.1: Difference between revisions

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|gene_description=solute carrier family 35 member A2
|gene_description=solute carrier family 35 member A2
|gene_id=7355
|gene_id=7355
|gene_name=SLC35A2
|gene_name=solute carrier family 35 member A2
|gene_source=HGNC:11022
|gene_source=HGNC:11022
|gene_symbol=SLC35A2
|gene_symbol=SLC35A2
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000635285.1 ENST00000247138.11 ENST00000376529.8 ENST00000635628.1 ENST00000445167.7 ENST00000635589.1 ENST00000616181.5 ENST00000452555.7 ENST00000635238.1 ENST00000634665.1 ENST00000635015.1 ENST00000634461.1 NM_001282650.2 NM_001282651.2 NM_001042498.3 NM_005660.3 NM_001282647.2 NM_001282649.2 NM_001032289.3 D88146 AK225508 BC035747 AK290284 AK293415 AK293419 AK298484 AK299748
|transcript_name=ENST00000635285.1 ENST00000247138.11 ENST00000376529.8 ENST00000635628.1 ENST00000445167.7 ENST00000635589.1 ENST00000616181.5 ENST00000452555.7 ENST00000635238.1 ENST00000634665.1 ENST00000635015.1 ENST00000634461.1 D88146 AK225508 BC035747 AK290284 AK293415 AK293419 AK298484 AK299748
|tss_cluster_detected=13
|tss_cluster_detected=13
|tss_id=rfhg_235931.1
|tss_id=rfhg_235931.1

Latest revision as of 05:27, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_235931.1
TSS ID(Version3):hg_199197.1
Species:human
Chr:chrX
Start:48911639
End:48911671
Strand:-
Source datasetsFANTOM5|EPD|PRJNA4843412|DRA013844|PRJNA401781|PRJDB5282
|PRJNA548673|PRJNA597322|PRJNA615891
ProtocolCAGE|TSS_database|NETCAGE|oligo_capping|C1CAGE
|ReCappable-seq|STRIPE-seq|SLIC_CAGE|TIF-seq2|RAMPAGE
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4282764,EH38E2754210)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000635285.1:0
ENST00000247138.11:0
ENST00000376529.8:0
ENST00000635628.1:0
ENST00000445167.7:0
ENST00000635589.1:0
ENST00000616181.5:0
ENST00000452555.7:0
ENST00000635238.1:0
ENST00000634665.1:0
ENST00000635015.1:0
ENST00000634461.1:0
D88146:0
AK225508:0
BC035747:0
AK290284:0
AK293415:0
AK293419:0
AK298484:0
AK299748:0
GeneID:7355
HGNC/MGI_ID:HGNC:11022
UniProt_ID:A0A0U1RR61 A0A0U1RRB4 A0A0U1RRG4 A0A0U1RRN1 A6NFI1 B4DE15 B4DSH7 P78381
Nearer transcript ids and distances:
  • KJ892355:2
  • CR450287:3
  • AK292816:-4
  • ENST00000635460.1:5
  • ENST00000376512.2:-6
  • ENST00000446885.1:-266
  • ENST00000376521.6:-287
  • ENST00000376515.8:-287
  • NM_001282648.2:-287
  • D84454:-287
view more...
Gene_name:solute carrier family 35 member A2
Gene_symbol:SLC35A2
Gene_synonyms:UGAT UGT UGT1 UGT2 UGTL
Gene_source:HGNC:11022



TATA-Box annotation

Distance to TSS:-9
Nearest PromoterID:NM_001282647
Entrez ID:7355
Nearest Unigene:Hs.21899
Nearest Refseq:NM_005660
Nearest Ensembl:ENSG00000102100
Gene Name:solute carrier family 35 member A2
Gene Alias:CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL
Gene Type:protein-coding
CpG%:0.093750
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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