TSS: Rfhg 240713.1: Difference between revisions

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|gene_description=C-X9-C motif containing 4
|gene_description=C-X9-C motif containing 4
|gene_id=100272147 4515
|gene_id=100272147 4515
|gene_name=CMC4
|gene_name=C-X9-C motif containing 4; mature T cell proliferation 1
|gene_source=HGNC:35428 HGNC:7423
|gene_source=HGNC:35428 HGNC:7423
|gene_symbol=CMC4 MTCP1
|gene_symbol=CMC4 MTCP1
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000369484.8 ENST00000369476.8 ENST00000482244.5 NM_001018024.3 NM_001018025.4
|transcript_name=ENST00000369484.8 ENST00000369476.8 ENST00000482244.5
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_240713.1
|tss_id=rfhg_240713.1

Latest revision as of 06:58, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_240713.1
TSS ID(Version3):hg_201083.1
hg_201084.1
Species:human
Chr:chrX
Start:155071065
End:155071173
Strand:-
Source datasetsFANTOM5|PRJNA615891|PRJNA401781|PRJNA548673|PRJDB5282
|PRJNA4843412|DRA013844
ProtocolCAGE|TIF-seq2|RAMPAGE|oligo_capping|SLIC_CAGE
|ReCappable-seq|C1CAGE|NETCAGE
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D4322925,EH38E2774593)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000369484.8:0
ENST00000369476.8:0
ENST00000482244.5:0
GeneID:100272147 4515
HGNC/MGI_ID:HGNC:35428 HGNC:7423
UniProt_ID:P56277 P56278
Nearer transcript ids and distances:
  • BC002600:-61
  • X64644:-85
view more...
Gene_name:C-X9-C motif containing 4; mature T cell proliferation 1
Gene_symbol:CMC4 MTCP1
Gene_synonyms:P13MTCP1 P8MTCP1 TCL1C p8 p8MTCP1
Gene_source:HGNC:35428 HGNC:7423



TATA-Box annotation

Distance to TSS:17
Nearest PromoterID:NM_001018024
Entrez ID:100272147
Nearest Unigene:Hs.6917
Nearest Refseq:NM_001018024
Nearest Ensembl:ENSG00000182712
Gene Name:C-X9-C motif containing 4; mature T cell proliferation 1
Gene Alias:C6.1B|MTCP1|MTCP1B|MTCP1NB|p8|p8MTCP1
Gene Type:protein-coding
CpG%:0.148148
GC%:0.788991
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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