TSS: Rfhg 240718.1: Difference between revisions

Latest revision as of 06:58, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_240718.1
Species:	human
Chr:	chrX

Start:	155216424
End:	155216433
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4322989,EH38E2774619)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001303545.1:0 LF385332:0 MA620909:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC009570:25 ENST00000286428.7:27 NM_003372.7:27 AK313420:27 BC046094:38 Y17394:38 BC040002:40 CU692296:50 AB464347:50 BT019604:50 KJ892368:50 NM_001303543.1:-151 U96759:-151 LF380988:479 MA616565:479 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	4
Nearest PromoterID:	NM_001303545
Entrez ID:	7411
Nearest Unigene:	Hs.436803
Nearest Refseq:	NM_003372
Nearest Ensembl:	ENSG00000155959
Gene Name:
Gene Alias:	HIBBJ46\|PFD3\|PFDN3\|VBP-1
Gene Type:	protein-coding
CpG%:	0.111111
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 16: / Line 16: @@
 |gene_description=VHL binding protein 1
 |gene_id=
-|gene_name=VBP1
+|gene_name=
 |gene_source=
 |gene_symbol=