TSS: Rfhg 39063.1: Difference between revisions

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|gene_description=ring finger protein 25
|gene_description=ring finger protein 25
|gene_id=64320
|gene_id=64320
|gene_name=RNF25
|gene_name=ring finger protein 25
|gene_source=HGNC:14662
|gene_source=HGNC:14662
|gene_symbol=RNF25
|gene_symbol=RNF25
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000473034.5 ENST00000295704.7 ENST00000463188.5 NM_022453.3 LF205247 MA440824 AK289501 BC015612 AK023968 BC028167 AK222525
|transcript_name=ENST00000473034.5 ENST00000295704.7 ENST00000463188.5 AK289501 BC015612 AK023968 BC028167 AK222525
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_39063.1
|tss_id=rfhg_39063.1

Latest revision as of 11:40, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_39063.1
Species:human
Chr:chr2
Start:218671971
End:218672009
Strand:-
Source datasetsPRJDB5282|PRJNA401781|PRJNA548673|PRJNA615891|PRJNA4843412
|DRA013844
ProtocolC1CAGE|CAGE|RAMPAGE|oligo_capping|ReCappable-seq|SLIC_CAGE
|NETCAGE|TIF-seq2
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3245565,EH38E2075538)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000473034.5:0
ENST00000295704.7:0
ENST00000463188.5:0
AK289501:0
BC015612:0
AK023968:0
BC028167:0
AK222525:0
GeneID:64320
HGNC/MGI_ID:HGNC:14662
UniProt_ID:Q96BH1
Nearer transcript ids and distances:
  • JF432200:1
  • KJ894545:1
  • AB527514:1
  • CU677361:1
  • ENST00000423170.1:4
  • LF318613:97
  • MA554190:97
view more...
Gene_name:ring finger protein 25
Gene_symbol:RNF25
Gene_synonyms:AO7 FLJ13906
Gene_source:HGNC:14662



TATA-Box annotation

Distance to TSS:12
Nearest PromoterID:NM_022453
Entrez ID:64320
Nearest Unigene:Hs.471403
Nearest Refseq:NM_022453
Nearest Ensembl:ENSG00000163481
Gene Name:ring finger protein 25
Gene Alias:AO7
Gene Type:protein-coding
CpG%:0.105263
GC%:0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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