TSS: Rfhg 73183.1: Difference between revisions

Latest revision as of 22:26, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_73183.1
TSS ID(Version3):	hg_58988.1
Species:	human
Chr:	chr5

Start:	141330483
End:	141330536
Strand:	+

Source datasets

FANTOM5|PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3767958,EH38E2414638)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000517417.3:0
GeneID:	56114
HGNC/MGI_ID:	HGNC:8696
UniProt_ID:	Q9Y5H4
Nearer transcript ids and distances:	ENST00000378105.4:35 BC112082:101 BC112084:101 AF152507:149 AF152318:149 view more...

Gene_name:	protocadherin gamma subfamily A, 1
Gene_symbol:	PCDHGA1
Gene_synonyms:	PCDH-GAMMA-A1
Gene_source:	HGNC:8696

TATA-Box annotation

Distance to TSS:	-176
Nearest PromoterID:	NM_018912
Entrez ID:	56114
Nearest Unigene:	Hs.368160
Nearest Refseq:	NM_018912
Nearest Ensembl:	ENSG00000204956
Gene Name:	protocadherin gamma subfamily A, 1
Gene Alias:	PCDH-GAMMA-A1
Gene Type:	protein-coding
CpG%:	0.037736
GC%:	0.425926
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=protocadherin gamma subfamily A, 1
 |gene_id=56114
-|gene_name=PCDHGA1
+|gene_name=protocadherin gamma subfamily A, 1
 |gene_source=HGNC:8696
 |gene_symbol=PCDHGA1
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000517417.3 NM_031993.2 NM_018912.3
+|transcript_name=ENST00000517417.3
 |tss_cluster_detected=3
 |tss_id=rfhg_73183.1