TSS: Rfhg 79913.1: Difference between revisions

Latest revision as of 00:30, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_79913.1
Species:	human
Chr:	chr6

Start:	28896437
End:	28896464
Strand:	+

Source datasets

PRJNA401781

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3829105,EH38E2457574)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000444986.1:66
GeneID:	414760
HGNC/MGI_ID:	HGNC:18323
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	HLA complex group 14
Gene_symbol:	HCG14
Gene_synonyms:	dJ111M5.4
Gene_source:	HGNC:18323

TATA-Box annotation

Distance to TSS:	-80
Nearest PromoterID:	NR_104117
Entrez ID:	414760
Nearest Unigene:	Hs.211005
Nearest Refseq:	NR_104117
Nearest Ensembl:	ENSG00000224157
Gene Name:	HLA complex group 14
Gene Alias:	dJ111M5.4
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=HLA complex group 14
 |gene_id=414760
-|gene_name=HCG14
+|gene_name=HLA complex group 14
 |gene_source=HGNC:18323
 |gene_symbol=HCG14
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000444986.1 NR_104117.1
+|transcript_name=ENST00000444986.1
 |tss_cluster_detected=1
 |tss_id=rfhg_79913.1