TSS: Rfmm 125062.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 16: | Line 16: | ||
|gene_description= | |gene_description= | ||
|gene_id=238683 | |gene_id=238683 | ||
|gene_name= | |gene_name=spermatogenesis associated 31 subfamily D, member 1C | ||
|gene_source=MGI:3588241 | |gene_source=MGI:3588241 | ||
|gene_symbol=Spata31d1c | |gene_symbol=Spata31d1c | ||
| Line 35: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000099427.3 | |transcript_name=ENSMUST00000099427.3 AK133350 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfmm_125062.1 | |tss_id=rfmm_125062.1 | ||
Latest revision as of 23:36, 18 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001083890.2 |
| Entrez ID: | Spata31d1c |
| Nearest Unigene: | NM_001083890 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | spermatogenesis associated 31 subfamily D, member 1C |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.368421 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.