TSS: Rfmm 147512.1: Difference between revisions

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|gene_description=
|gene_description=
|gene_id=106489
|gene_id=106489
|gene_name=4930506C21Rik
|gene_name=SFT2 domain containing 1; predicted gene, 49987
|gene_source=MGI:1918689 MGI:6275268
|gene_source=MGI:1918689 MGI:6275268
|gene_symbol=Gm49987 Sft2d1
|gene_symbol=Gm49987 Sft2d1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENSMUST00000154553.2 ENSMUST00000150728.8 ENSMUST00000140890.3 ENSMUST00000130782.8 ENSMUST00000135627.8 NM_134114.2 BC091770 BC006777
|transcript_name=ENSMUST00000154553.2 ENSMUST00000150728.8 ENSMUST00000140890.3 ENSMUST00000130782.8 ENSMUST00000135627.8 BC091770 BC006777
|tss_cluster_detected=3
|tss_cluster_detected=3
|tss_id=rfmm_147512.1
|tss_id=rfmm_147512.1

Latest revision as of 05:45, 19 March 2025

Basic information about the TSS

TSS ID:rfmm_147512.1
Species:mouse
Chr:chr17
Start:8529934
End:8530000
Strand:+
Source datasetsGSE117655|DRA000914|PRJDB10397
ProtocoldeepCAGE|CAGE_and_CAGEscan|C1CAGE
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D2546945,EM10E1049615)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000154553.2:0
ENSMUST00000150728.8:0
ENSMUST00000140890.3:0
ENSMUST00000130782.8:0
ENSMUST00000135627.8:0
BC091770:0
BC006777:0
GeneID:106489
HGNC/MGI_ID:MGI:1918689 MGI:6275268
UniProt_ID:D6RFQ7 Q5SSN7
Nearer transcript ids and distances:
  • ENSMUST00000145276.8:1
  • ENSMUST00000141213.2:7
  • NM_001357890.1:-14
  • LF200870:-15
  • MA436447:-15
view more...
Gene_name:SFT2 domain containing 1; predicted gene, 49987
Gene_symbol:Gm49987 Sft2d1
Gene_synonyms:5630401J11Rik
Gene_source:MGI:1918689 MGI:6275268



TATA-Box annotation

Distance to TSS:-17
Nearest PromoterID:NR_073374.1
Entrez ID:4930506C21Rik
Nearest Unigene:NR_073374
Nearest Refseq:
Nearest Ensembl:
Gene Name:SFT2 domain containing 1; predicted gene, 49987
Gene Alias:
Gene Type:
CpG%:0.121212
GC%:0.641791
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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