TSS: Rfmm 160690.1: Difference between revisions
From referenceTSS
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|gene_description= | |gene_description= | ||
|gene_id=399599 | |gene_id=399599 | ||
|gene_name= | |gene_name=coiled-coil domain containing 87 | ||
|gene_source=MGI:3026882 | |gene_source=MGI:3026882 | ||
|gene_symbol=Ccdc87 | |gene_symbol=Ccdc87 | ||
| Line 35: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=AK029877 BC145660 | |transcript_name=AK029877 BC145660 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfmm_160690.1 | |tss_id=rfmm_160690.1 | ||
Latest revision as of 09:25, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2601302,EM10E1072540) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 80 |
|---|---|
| Nearest PromoterID: | NM_207268.3 |
| Entrez ID: | Ccdc87 |
| Nearest Unigene: | NM_207268 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | coiled-coil domain containing 87 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.055556 |
| GC%: | 0.534247 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.