TSS: Hg 102899.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-24648 |entrez_id=56751 |gc_percent=0.477612 |gene_alias=- |gene_description=BarH like homeobox 1 |gene_name=BARHL1 |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance= | |||
|distance_to_tss=-24648 | |distance_to_tss=-24648 | ||
|end=132557959 | |||
|entrez_id=56751 | |entrez_id=56751 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_020064 | |nearest_refseq=NM_020064 | ||
|nearest_unigene=Hs.283809 | |nearest_unigene=Hs.283809 | ||
|num_trans=0 | |||
|species=human | |||
|start=132557956 | |||
|strand=- | |||
|tata_box="0(CACTCTAAAAGA,-,0.00),43(GCTTATAAACTC,+,0.00)" | |tata_box="0(CACTCTAAAAGA,-,0.00),43(GCTTATAAACTC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102899.1 | |tss_id=hg_102899.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:46, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -24648 |
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| Nearest PromoterID: | NM_020064 |
| Entrez ID: | 56751 |
| Nearest Unigene: | Hs.283809 |
| Nearest Refseq: | NM_020064 |
| Nearest Ensembl: | ENSG00000125492 |
| Gene Name: | BARHL1 |
| Gene Alias: | - |
| Gene Description: | BarH like homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "0(CACTCTAAAAGA,-,0.00),43(GCTTATAAACTC,+,0.00)" |