TSS: Rfmm 18633.1: Difference between revisions

Latest revision as of 12:58, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_18633.1
Species:	mouse
Chr:	chr2

Start:	118865265
End:	118865350
Strand:	+

Source datasets

GSE117655|DRA000914

Protocol

deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D1720335,EM10E0707138)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000028796.2:0 AK041787:0 BC117827:0 BC117828:0 AK044767:0 AK043340:0 AK014804:0 AK035752:0 AK035800:0
GeneID:	271842
HGNC/MGI_ID:	MGI:1918066
UniProt_ID:	Q149F1 Q8BY63
Nearer transcript ids and distances:

Gene_name:	RNA pseudouridylate synthase domain containing 2
Gene_symbol:	Rpusd2
Gene_synonyms:	4921503C21Rik BB231107
Gene_source:	MGI:1918066

TATA-Box annotation

Distance to TSS:	36
Nearest PromoterID:	NM_173450.3
Entrez ID:	Rpusd2
Nearest Unigene:	NM_173450
Nearest Refseq:
Nearest Ensembl:
Gene Name:	RNA pseudouridylate synthase domain containing 2
Gene Alias:
Gene Type:
CpG%:	0.070588
GC%:	0.651163
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=
 |gene_id=271842
-|gene_name=Rpusd2
+|gene_name=RNA pseudouridylate synthase domain containing 2
 |gene_source=MGI:1918066
 |gene_symbol=Rpusd2
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENSMUST00000028796.2 NM_173450.3 AK041787 BC117827 BC117828 AK044767 AK043340 AK014804 AK035752 AK035800
+|transcript_name=ENSMUST00000028796.2 AK041787 BC117827 BC117828 AK044767 AK043340 AK014804 AK035752 AK035800
 |tss_cluster_detected=2
 |tss_id=rfmm_18633.1