TSS: Rfmm 39449.1: Difference between revisions
From referenceTSS
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|gene_description= | |gene_description= | ||
|gene_id=67219 | |gene_id=67219 | ||
|gene_name= | |gene_name=mediator complex subunit 18 | ||
|gene_source=MGI:1914469 | |gene_source=MGI:1914469 | ||
|gene_symbol=Med18 | |gene_symbol=Med18 | ||
| Line 35: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000102567.4 | |transcript_name=ENSMUST00000102567.4 AK159696 AK012903 AK012886 AK137887 | ||
|tss_cluster_detected=3 | |tss_cluster_detected=3 | ||
|tss_id=rfmm_39449.1 | |tss_id=rfmm_39449.1 | ||
Latest revision as of 18:44, 19 March 2025
Basic information about the TSS
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| Source datasets | PRJDB10397|GSE117655|DRA000914 | |||||||||||||
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| Protocol | C1CAGE|deepCAGE|CAGE_and_CAGEscan | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2754006,EM10E1134140) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_026039.3 |
| Entrez ID: | Med18 |
| Nearest Unigene: | NM_026039 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | mediator complex subunit 18 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.036364 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.