TSS: Rfmm 41629.1: Difference between revisions

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|gene_description=
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|gene_id=
|gene_name=Rpsa-ps12
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=

Latest revision as of 19:19, 19 March 2025

Basic information about the TSS


TSS ID:rfmm_41629.1
Species:mouse
Chr:chr4
Start:149235029
End:149235062
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:dELS (EM10D2762035,EM10E1138579)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF275799:-16
MA511376:-16
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF275800:-134
  • MA511377:-134
  • AK198787:250
  • AK205810:250
  • AK208960:250
  • LF275801:-314
  • MA511378:-314
  • LF275798:389
  • MA511375:389
  • AK195387:397
  • AK198478:397
  • AK203964:397
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-7123
Nearest PromoterID:Rpsa-ps12
Entrez ID:Rpsa-ps12
Nearest Unigene:Rpsa-ps12
Nearest Refseq:
Nearest Ensembl:
Gene Name:
Gene Alias:
Gene Type:NA
CpG%:0.060606
GC%:0.735294
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):